Gene expression has been quantified with the Salmon tool
(
Patro R. et al.).
Expression scores are stored as Transcripts-per-Milion (TPM) values in a tab-separated format (TSV) table.
Transcript expression was aggregated over all transcripts for a specific gene.
Each row in the expression table represents a single, unique gene. The first column
corresponds to a gene ID. Each of the next columns stores TPM values of
a specific RNA-Seq sample, as in the scheme below:
|
Sample1 |
Sample2 |
... |
| Gene1 |
|
|
|
| Gene2 |
|
|
|
| Gene3 |
|
|
|
| ... |
|
|
|
